| Versatile and open software for comparing large genomes S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ... Genome biology 5, 1-9, 2004 | 5646 | 2004 |
| REPuter: the manifold applications of repeat analysis on a genomic scale S Kurtz, JV Choudhuri, E Ohlebusch, C Schleiermacher, J Stoye, ... Nucleic acids research 29 (22), 4633-4642, 2001 | 2051 | 2001 |
| LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons D Ellinghaus, S Kurtz, U Willhoeft BMC bioinformatics 9, 1-14, 2008 | 1326 | 2008 |
| Replacing suffix trees with enhanced suffix arrays MI Abouelhoda, S Kurtz, E Ohlebusch Journal of discrete algorithms 2 (1), 53-86, 2004 | 997 | 2004 |
| Fast mapping of short sequences with mismatches, insertions and deletions using index structures S Hoffmann, C Otto, S Kurtz, CM Sharma, P Khaitovich, J Vogel, ... PLoS computational biology 5 (9), e1000502, 2009 | 658 | 2009 |
| REPuter: fast computation of maximal repeats in complete genomes. S Kurtz, C Schleiermacher Bioinformatics (Oxford, England) 15 (5), 426-427, 1999 | 562 | 1999 |
| Reducing the space requirement of suffix trees S Kurtz Software: Practice and Experience 29 (13), 1149-1171, 1999 | 544 | 1999 |
| GenomeTools: a comprehensive software library for efficient processing of structured genome annotations G Gremme, S Steinbiss, S Kurtz IEEE/ACM transactions on computational biology and bioinformatics 10 (3 …, 2013 | 393 | 2013 |
| Genomic Deletion of PTEN Is Associated with Tumor Progression and Early PSA Recurrence in ERG Fusion-Positive and Fusion-Negative Prostate Cancer A Krohn, T Diedler, L Burkhardt, PS Mayer, C De Silva, ... The American journal of pathology 181 (2), 401-412, 2012 | 390 | 2012 |
| A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes S Kurtz, A Narechania, JC Stein, D Ware BMC genomics 9, 1-18, 2008 | 327 | 2008 |
| Engineering a software tool for gene structure prediction in higher organisms G Gremme, V Brendel, ME Sparks, S Kurtz Information and Software Technology 47 (15), 965-978, 2005 | 327 | 2005 |
| Local similarity in RNA secondary structures M Hochsmann, T Toller, R Giegerich, S Kurtz Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE …, 2003 | 326 | 2003 |
| Fine-grained annotation and classification of de novo predicted LTR retrotransposons S Steinbiss, U Willhoeft, G Gremme, S Kurtz Nucleic acids research 37 (21), 7002-7013, 2009 | 295 | 2009 |
| From Ukkonen to McCreight and Weiner: A unifying view of linear-time suffix tree construction R Giegerich, S Kurtz Algorithmica 19, 331-353, 1997 | 286 | 1997 |
| Efficient multiple genome alignment M Höhl, S Kurtz, E Ohlebusch Bioinformatics 18 (suppl_1), S312-S320, 2002 | 254 | 2002 |
| The enhanced suffix array and its applications to genome analysis MI Abouelhoda, S Kurtz, E Ohlebusch Algorithms in Bioinformatics: Second International Workshop, WABI 2002 Rome …, 2002 | 197 | 2002 |
| Recurrent deletion of 3p13 targets multiple tumour suppressor genes and defines a distinct subgroup of aggressive ERG fusion‐positive prostate cancers A Krohn, A Seidel, L Burkhardt, F Bachmann, M Mader, K Grupp, ... The Journal of pathology 231 (1), 130-141, 2013 | 183 | 2013 |
| Fast index based algorithms and software for matching position specific scoring matrices M Beckstette, R Homann, R Giegerich, S Kurtz BMC bioinformatics 7, 1-25, 2006 | 173 | 2006 |
| Efficient implementation of lazy suffix trees R Giegerich, S Kurtz, J Stoye Software: Practice and Experience 33 (11), 1035-1049, 2003 | 132 | 2003 |
| Optimal exact string matching based on suffix arrays MI Abouelhoda, E Ohlebusch, S Kurtz String Processing and Information Retrieval: 9th International Symposium …, 2002 | 124 | 2002 |
