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Laksshman Sundaram
Laksshman Sundaram
Graduate Student in Computer Science, Stanford University
Dirección de correo verificada de stanford.edu
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Predicting the clinical impact of human mutation with deep neural networks
L Sundaram, H Gao, SR Padigepati, JF McRae, Y Li, JA Kosmicki, ...
Nature genetics 50 (8), 1161-1170, 2018
4592018
Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution
AE Trevino, F Müller, J Andersen, L Sundaram, A Kathiria, A Shcherbina, ...
Cell 184 (19), 5053-5069. e23, 2021
3432021
Deep Learning-Based Techniques for Training Deep Convolutional Neural Networks
H Gao, F Kai-How, L Sundaram, JF McRAE
US Patent App. 16/160,903, 2019
1152019
The landscape of tolerated genetic variation in humans and primates
H Gao, T Hamp, J Ede, JG Schraiber, J McRae, M Singer-Berk, Y Yang, ...
Science 380 (6648), eabn8153, 2023
1042023
Beyond the exome: what’s next in diagnostic testing for Mendelian conditions
MH Wojcik, CM Reuter, S Marwaha, M Mahmoud, MH Duyzend, ...
The American Journal of Human Genetics 110 (8), 1229-1248, 2023
672023
Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease
M Ameen, L Sundaram, M Shen, A Banerjee, S Kundu, S Nair, ...
Cell 185 (26), 4937-4953. e23, 2022
622022
Semi-supervised learning for training an ensemble of deep convolutional neural networks
L Sundaram, F Kai-How, H Gao, JF McRAE
US Patent 11,798,650, 2023
602023
DeepBipolar: Identifying genomic mutations for bipolar disorder via deep learning
S Laksshman, RR Bhat, V Viswanath, X Li
Human mutation 38 (9), 1217-1224, 2017
572017
Semantic edge labeling over legal citation graphs
A Sadeghian, L Sundaram, D Wang, W Hamilton, K Branting, C Pfeifer
Proceedings of the workshop on legal text, document, and corpus analytics …, 2016
52*2016
Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges
R Daneshjou, Y Wang, Y Bromberg, S Bovo, PL Martelli, G Babbi, ...
Human mutation 38 (9), 1182-1192, 2017
482017
Identification of constrained sequence elements across 239 primate genomes
LFK Kuderna, JC Ulirsch, S Rashid, M Ameen, L Sundaram, G Hickey, ...
Nature 625 (7996), 735-742, 2024
412024
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods
Genome biology 25 (1), 53, 2024
332024
Deep convolutional neural networks for variant classification
L Sundaram, F Kai-How, H Gao, SR PADIGEPATI, JF McRAE
US Patent 11,315,016, 2022
252022
Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency
S Nair, M Ameen, L Sundaram, A Pampari, J Schreiber, A Balsubramani, ...
BioRxiv, 2023
212023
Stepwise generation of human induced pluripotent stem cell–derived cardiac pericytes to model coronary microvascular dysfunction
M Shen, C Liu, SR Zhao, A Manhas, L Sundaram, M Ameen, JC Wu
Circulation 147 (6), 515-518, 2023
132023
Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers
L Sundaram, A Kumar, M Zatzman, A Salcedo, N Ravindra, S Shams, ...
Science 385 (6713), eadk9217, 2024
22024
Analysis of Whole Genome Sequencing in a Cohort of Individuals with PHACE Syndrome Suggests Dysregulation of RAS/PI3K Signaling
ES Partan, F Blei, SL Chamlin, OMT Davies, BA Drolet, IJ Frieden, ...
medRxiv, 2021.08. 05.21261553, 2021
22021
Recurrent neural network-based variant pathogenicity classifier
H Gao, F Kai-How, L Sundaram, JF McRAE
US Patent 11,386,324, 2022
12022
Critical assessment of genome interpretation consortium. CAGI, the critical assessment of genome interpretation, establishes progress and pprospects for computational genetic …
S Jain, C Bakolitsa, EB Steven, P Radivojac, J Moult, S Repo, AH Roger, ...
Genome Biology 22 (22; 25 (1): 53.), 1-46, 2024
2024
Quality detection of variant calling using a machine learning classifier
H Gao, H Tobias, JGJ McMaster-Schraiber, L Sundaram, F Kai-How
US Patent App. 17/952,194, 2023
2023
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