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Fanny Perraudeau
Fanny Perraudeau
Bain & Company
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A general and flexible method for signal extraction from single-cell RNA-seq data
D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert
Nature communications 9 (1), 284, 2018
6482018
Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications
K Van den Berge, F Perraudeau, C Soneson, MI Love, D Risso, JP Vert, ...
Genome biology 19, 1-17, 2018
2032018
Improvements to postprandial glucose control in subjects with type 2 diabetes: a multicenter, double blind, randomized placebo-controlled trial of a novel probiotic formulation
F Perraudeau, P McMurdie, J Bullard, A Cheng, C Cutcliffe, A Deo, J Eid, ...
BMJ Open Diabetes Research and Care 8 (1), e001319, 2020
1042020
Identification of Allorecognition Loci in Neurospora crassa by Genomics and Evolutionary Approaches
J Zhao, P Gladieux, E Hutchison, J Bueche, C Hall, F Perraudeau, ...
Molecular biology and evolution 32 (9), 2417-2432, 2015
522015
Genomic sequencing reveals historical, demographic and selective factors associated with the diversification of the fire‐associated fungus Neurospora discreta
P Gladieux, BA Wilson, F Perraudeau, LA Montoya, D Kowbel, ...
Molecular ecology 24 (22), 5657-5675, 2015
382015
Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference
F Perraudeau, D Risso, K Street, E Purdom, S Dudoit
F1000Research 6, 2017
262017
A general and flexible method for signal extraction from single-cell RNA-seq data. Nat Commun. 2018; 9 (1): 284
D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert
15
Methods and compositions for determining metabolic maps
C Cutcliffe, JS Eid, JH Bullard, T Altman, F Perraudeau
US Patent App. 15/945,705, 2018
112018
ZINB-WaVE: A general and flexible method for signal extraction from single-cell RNA-seq data. bioRxiv
D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert
Published online November 2 (2017), 10.1101, 2017
11*2017
Improvements to postprandial glucose control in subjects with type 2 diabetes: a multicenter, double blind, randomized placebo-controlled trial of a novel probiotic formulation …
F Perraudeau, P McMurdie, J Bullard, A Cheng, C Cutcliffe, A Deo, J Eid, ...
DOI: https://doi. org/10.1136/bmjdrc-2020-001319, 0
11
CALDERA: finding all significant de Bruijn subgraphs for bacterial GWAS
H Roux de Bézieux, L Lima, F Perraudeau, A Mary, S Dudoit, L Jacob
Bioinformatics 38 (Supplement_1), i36-i44, 2022
102022
ZINB-WaVE: a general and flexible method for signal extraction from single-cell RNA-seq data. bioRxiv 125112
D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert
62017
Medical food assessment using a smartphone app with continuous glucose monitoring sensors: proof-of-concept study
H Roux de Bézieux, J Bullard, O Kolterman, M Souza, F Perraudeau
JMIR Formative Research 5 (3), e20175, 2021
42021
Accurate Determination of Bacterial Abundances in Human Metagenomes Using Full-length 16S Sequencing Reads
F Perraudeau, S Dudoit, JH Bullard
bioRxiv, 228619, 2017
32017
FiberGrowth Pipeline: A Framework Toward Predicting Fiber-Specific Growth From Human Gut Bacteroidetes Genomes
B Colnet, CMK Sieber, F Perraudeau, M Leclerc
Frontiers in Microbiology 12, 632567, 2021
22021
Methods And Compositions For Treating Liver Disorders
O Kolterman, F Perraudeau, J Bullard, J Eid, C Cutcliffe
US Patent App. 17/610,398, 2022
12022
Microbial compositions and methods of use
JS Eid, C Cutcliffe, O Kolterman, F Perraudeau, J Bullard, P Mcmurdie, ...
US Patent App. 17/210,078, 2021
12021
METHODS AND COMPOSITIONS FOR TREATING HEPATIC DISORDERS
O Kolterman, F PERRAUDEAU, J Bullard, J Eid, C Cutcliffe
2023
Methods and compositions for treating liver disorders
O Kolterman, F PERRAUDEAU, J Bullard, J Eid, C Cutcliffe
2020
758-P: Medical Food (MF) with Butyrate Producing (BP)+ Mucin Regulating (MR) Microbes Improves Glucose Control (GC) in T2D
OG Kolterman, F Perraudeau, MS Iyer, JS Eid, J Bullard, ...
Diabetes 68 (Supplement_1), 2019
2019
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