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Nabil-Fareed Alikhan
Nabil-Fareed Alikhan
Dirección de correo verificada de ndm.ox.ac.uk - Página principal
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BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
NF Alikhan, NK Petty, NL Ben Zakour, SA Beatson
BMC genomics 12, 1-10, 2011
28842011
Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ...
Cell 184 (1), 64-75. e11, 2021
10762021
Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study
KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ...
The Lancet Infectious Diseases 22 (1), 35-42, 2022
8132022
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
Z Zhou, NF Alikhan, K Mohamed, Y Fan, M Achtman, D Brown, ...
Genome research 30 (1), 138-152, 2020
669*2020
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Z Zhou, NF Alikhan, MJ Sergeant, N Luhmann, C Vaz, AP Francisco, ...
Genome research 28 (9), 1395-1404, 2018
6562018
A genomic overview of the population structure of Salmonella
NF Alikhan, Z Zhou, MJ Sergeant, M Achtman
PLoS genetics 14 (4), e1007261, 2018
5172018
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7
B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ...
Cell reports 35 (13), 2021
4262021
Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study
MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ...
The Lancet Public Health 6 (5), e335-e345, 2021
3392021
Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak
ME Pearce, NF Alikhan, TJ Dallman, Z Zhou, K Grant, MCJ Maiden
International journal of food microbiology 274, 1-11, 2018
1752018
Exponential growth, high prevalence of SARS-CoV-2, and vaccine effectiveness associated with the Delta variant
P Elliott, D Haw, H Wang, O Eales, CE Walters, KEC Ainslie, C Atchison, ...
Science 374 (6574), eabl9551, 2021
1162021
Pan-genome analysis of ancient and modern Salmonella enterica demonstrates genomic stability of the invasive para C lineage for millennia
Z Zhou, I Lundstrøm, A Tran-Dien, S Duchêne, NF Alikhan, MJ Sergeant, ...
Current Biology 28 (15), 2420-2428. e10, 2018
106*2018
CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes
DJ Baker, A Aydin, T Le-Viet, GL Kay, S Rudder, L de Oliveira Martins, ...
Genome medicine 13, 1-11, 2021
101*2021
Emergence of human-adapted Salmonella enterica is linked to the Neolithization process
FM Key, C Posth, LR Esquivel-Gomez, R Hübler, MA Spyrou, ...
Nature ecology & evolution 4 (3), 324-333, 2020
972020
Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture
R Gilroy, A Ravi, M Getino, I Pursley, DL Horton, NF Alikhan, D Baker, ...
PeerJ 9, e10941, 2021
952021
Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation
M Bawn, NF Alikhan, G Thilliez, M Kirkwood, NE Wheeler, L Petrovska, ...
PLoS genetics 16 (6), e1008850, 2020
642020
Genomic diversity of Salmonella enterica-The UoWUCC 10K genomes project
M Achtman, Z Zhou, NF Alikhan, W Tyne, J Parkhill, M Cormican, ...
Wellcome Open Research 5, 2020
632020
The impact of viral mutations on recognition by SARS-CoV-2 specific T cells
TI de Silva, G Liu, BB Lindsey, D Dong, SC Moore, NS Hsu, D Shah, ...
Iscience 24 (11), 2021
612021
Genome-wide identification and characterization of a superfamily of bacterial extracellular contractile injection systems
L Chen, N Song, B Liu, N Zhang, NF Alikhan, Z Zhou, Y Zhou, S Zhou, ...
Cell reports 29 (2), 511-521. e2, 2019
542019
Mechanisms Involved in Acquisition of blaNDM Genes by IncA/C2 and IncFIIY Plasmids
AM Wailan, HE Sidjabat, WK Yam, NF Alikhan, NK Petty, AL Sartor, ...
Antimicrobial agents and chemotherapy 60 (7), 4082-4088, 2016
542016
REACT-1 round 12 report: resurgence of SARS-CoV-2 infections in England associated with increased frequency of the Delta variant
S Riley, H Wang, O Eales, D Haw, CE Walters, KEC Ainslie, C Atchison, ...
MedRxiv, 2021.06. 17.21259103, 2021
522021
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