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David B. Blumenthal
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Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing
S Sadegh, J Matschinske, DB Blumenthal, G Galindez, T Kacprowski, ...
Nature Communications 3518, 2020
1702020
On the exact computation of the graph edit distance
DB Blumenthal, J Gamper
Pattern Recognition Letters 134, 46-57, 2020
902020
Network medicine for disease module identification and drug repurposing with the NeDRex platform
S Sadegh, J Skelton, E Anastasi, J Bernett, DB Blumenthal, G Galindez, ...
Nature communications 12 (1), 6848, 2021
632021
Finding k-shortest paths with limited overlap
T Chondrogiannis, P Bouros, J Gamper, U Leser, DB Blumenthal
The VLDB Journal 29 (5), 1023-1047, 2020
582020
Comparing heuristics for graph edit distance computation
DB Blumenthal, N Boria, J Gamper, S Bougleux, L Brun
The VLDB Journal 29 (1), 419-458, 2020
572020
Privacy-preserving artificial intelligence techniques in biomedicine
R Torkzadehmahani, R Nasirigerdeh, DB Blumenthal, T Kacprowski, ...
Methods of information in medicine 61 (S 01), e12-e27, 2022
482022
The AIMe registry for artificial intelligence in biomedical research
J Matschinske, N Alcaraz, A Benis, M Golebiewski, DG Grimm, L Heumos, ...
Nature Methods 18 (10), 1128-1131, 2021
462021
On the limits of active module identification
O Lazareva, J Baumbach, M List, DB Blumenthal
Briefings in Bioinformatics 22 (5), bbab066, 2021
402021
Finding k-dissimilar paths with minimum collective length
T Chondrogiannis, P Bouros, J Gamper, U Leser, DB Blumenthal
Proceedings of the 26th ACM SIGSPATIAL International Conference on Advances …, 2018
362018
Improved lower bounds for graph edit distance
DB Blumenthal, J Gamper
IEEE Transactions on Knowledge and Data Engineering 30 (3), 503-516, 2017
282017
Fast linear sum assignment with error-correction and no cost constraints
S Bougleux, B Gaüzère, DB Blumenthal, L Brun
Pattern Recognition Letters 134, 37-45, 2020
242020
GEDLIB: A C++ library for graph edit distance computation
DB Blumenthal, S Bougleux, J Gamper, L Brun
International Workshop on Graph-Based Representations in Pattern Recognition …, 2019
242019
What is meaningful research and how should we measure it?
S Helmer, DB Blumenthal, K Paschen
Scientometrics 125 (1), 153-169, 2020
212020
BiCoN: network-constrained biclustering of patients and omics data
O Lazareva, S Canzar, K Yuan, J Baumbach, DB Blumenthal, P Tieri, ...
Bioinformatics 37 (16), 2398-2404, 2021
202021
Improved local search for graph edit distance
N Boria, DB Blumenthal, S Bougleux, L Brun
Pattern Recognition Letters 129, 19-25, 2020
192020
Exact computation of graph edit distance for uniform and non-uniform metric edit costs
DB Blumenthal, J Gamper
International Workshop on Graph-Based Representations in Pattern Recognition …, 2017
192017
Flimma: a federated and privacy-aware tool for differential gene expression analysis
O Zolotareva, R Nasirigerdeh, J Matschinske, R Torkzadehmahani, ...
Genome biology 22 (1), 338, 2021
18*2021
Federated principal component analysis for genome-wide association studies
A Hartebrodt, R Nasirigerdeh, DB Blumenthal, R Röttger
2021 IEEE International Conference on Data Mining (ICDM), 1090-1095, 2021
162021
Cracking the black box of deep sequence-based protein–protein interaction prediction
J Bernett, DB Blumenthal, M List
Briefings in Bioinformatics 25 (2), bbae076, 2024
142024
Robust disease module mining via enumeration of diverse prize-collecting Steiner trees
J Bernett, D Krupke, S Sadegh, J Baumbach, SP Fekete, T Kacprowski, ...
Bioinformatics 38 (6), 1600-1606, 2022
142022
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