Othman Soufan
Othman Soufan
Assistant Professor of Computer Science, University of Prince Mugrin
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MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis
J Chong, O Soufan, C Li, I Caraus, S Li, G Bourque, DS Wishart, J Xia
Nucleic acids research 46 (W1), W486-W494, 2018
NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis
G Zhou, O Soufan, J Ewald, REW Hancock, N Basu, J Xia
Nucleic acids research 47 (W1), W234-W241, 2019
miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology
L Chang, G Zhou, O Soufan, J Xia
Nucleic acids research 48 (W1), W244-W251, 2020
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature communications 10 (1), 2674, 2019
DWFS: A Wrapper Feature Selection Tool Based on a Parallel Genetic Algorithm
O Soufan, D Kleftogiannis, P Kalnis, VB Bajic
PLOS ONE, 2015
DASPfind: new efficient method to predict drug–target interactions
W Ba-Alawi, O Soufan, M Essack, P Kalnis, VB Bajic
Journal of cheminformatics 8, 1-9, 2016
DPubChem: a web tool for QSAR modeling and high-throughput virtual screening
O Soufan, W Ba-Alawi, A Magana-Mora, M Essack, VB Bajic
Scientific reports 8 (1), 9110, 2018
Transcriptome and physiological analysis reveal alterations in muscle metabolisms and immune responses of grass carp (Ctenopharyngodon idellus) cultured at different stocking …
H Zhao, O Soufan, J Xia, R Tang, L Li, D Li
Aquaculture 503, 186-197, 2019
Mining chemical activity status from high-throughput screening assays
O Soufan, W Ba-Alawi, M Afeef, M Essack, V Rodionov, P Kalnis, VB Bajic
PloS one 10 (12), e0144426, 2015
DRABAL: novel method to mine large high-throughput screening assays using Bayesian active learning
O Soufan, W Ba-Alawi, M Afeef, M Essack, P Kalnis, VB Bajic
Journal of cheminformatics 8, 1-14, 2016
FastBMD: an online tool for rapid benchmark dose–response analysis of transcriptomics data
J Ewald, O Soufan, J Xia, N Basu
Bioinformatics 37 (7), 1035-1036, 2021
EcoToxModules: custom gene sets to organize and analyze toxicogenomics data from ecological species
JD Ewald, O Soufan, D Crump, M Hecker, J Xia, N Basu
Environmental Science & Technology 54 (7), 4376-4387, 2020
T1000: a reduced gene set prioritized for toxicogenomic studies
O Soufan, J Ewald, C Viau, D Crump, M Hecker, N Basu, J Xia
PeerJ 7, e7975, 2019
A novel graph mining approach to predict and evaluate food-drug interactions
MM Rahman, SM Vadrev, A Magana-Mora, J Levman, O Soufan
Scientific reports 12 (1), 1061, 2022
DANNP: an efficient artificial neural network pruning tool
M Alshahrani, O Soufan, A Magana-Mora, VB Bajic
PeerJ Computer Science 3, e137, 2017
Development of a Comprehensive Toxicity Pathway Model for 17α-Ethinylestradiol in Early Life Stage Fathead Minnows (Pimephales promelas)
AJG Alcaraz, D Potesil, K Mikulasek, D Green, B Park, C Burbridge, ...
Environmental Science & Technology 55 (8), 5024-5036, 2021
Systematic selection of chemical fingerprint features improves the Gibbs energy prediction of biochemical reactions
M Alazmi, H Kuwahara, O Soufan, L Ding, X Gao
Bioinformatics 35 (15), 2634-2643, 2019
EcoToxXplorer: Leveraging Design Thinking to Develop a Standardized Web‐Based Transcriptomics Analytics Platform for Diverse Users.
O Soufan, J Ewald, G Zhou, O Hacariz, E Boulanger, AJ Alcaraz, G Hickey, ...
Environmental Toxicology & Chemistry 41 (1), 2022
Characterizing toxicity pathways of fluoxetine to predict adverse outcomes in adult fathead minnows (Pimephales promelas)
C Colville, AJ Alcaraz, D Green, B Park, J Xia, O Soufan, P Hruṧka, ...
Science of The Total Environment 817, 152747, 2022
Arrhythmia Detection using Mutual Information-Based Integration Method
O Soufan, S Arafat
World Conf. Soft Computing, 2011
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Artículos 1–20