| A single-cell atlas of the tumor and immune ecosystem of human breast cancer J Wagner, MA Rapsomaniki, S Chevrier, T Anzeneder, C Langwieder, ... Cell 177 (5), 1330-1345. e18, 2019 | 713 | 2019 |
| An end-to-end workflow for multiplexed image processing and analysis J Windhager, VRT Zanotelli, D Schulz, L Meyer, M Daniel, B Bodenmiller, ... Nature Protocols 18 (11), 3565-3613, 2023 | 118 | 2023 |
| napari: a multi-dimensional image viewer for Python J Ahlers, DA Moré, O Amsalem, A Anderson, G Bokota, P Boone, ... Zenodo, 1-2, 2023 | 42 | 2023 |
| Deciphering the signaling network of breast cancer improves drug sensitivity prediction M Tognetti, A Gabor, M Yang, V Cappelletti, J Windhager, OM Rueda, ... Cell Systems 12 (5), 401-418. e12, 2021 | 36 | 2021 |
| Deciphering the signaling network landscape of breast cancer improves drug sensitivity prediction M Tognetti, A Gabor, M Yang, V Cappelletti, J Windhager, K Charmpi, ... biorxiv, 2020.01. 21.907691, 2020 | 6 | 2020 |
| The imaging and molecular annotation of xenografts and tumours (IMAXT) high throughput data and analysis infrastructure EA González-Solares, A Dariush, C González-Fernández, AK Yoldaş, ... BioRxiv, 2021.06. 22.448403, 2021 | 5 | 2021 |
| Points2regions: Fast interactive clustering of in situ transcriptomics data A Andersson, A Behanova, C Avenel, C Wählby, F Malmberg bioRxiv, 2022 | 2 | 2022 |
| A stochastic hybrid model for DNA replication incorporating protein mobility dynamics J Windhager, A Paine, P Nathanailidou, E Tasiudi, MR Martínez, ... bioRxiv, 583187, 2019 | 2 | 2019 |
| Points2Regions: Fast, interactive clustering of imaging‐based spatial transcriptomics data A Andersson, A Behanova, C Avenel, J Windhager, F Malmberg, ... Cytometry Part A 105 (9), 677-687, 2024 | 1 | 2024 |
| A toolbox enabling a data-driven selection of regions of interest in tumor tissue sections for imaging mass cytometry analysis D Schulz, S Renaud-Tissot, R Liechti, N Eling, M Daniel, J Windhager, ... Cancer Research 81 (13_Supplement), 2756-2756, 2021 | 1 | 2021 |
| 199P Scalable multiplexed image analysis across cancer types as part of the IMMUcan consortium N Eling, J Dorier, S Rusakiewicz, S Tissot, P Devanand, M Daniel, ... Immuno-Oncology and Technology 20, 2023 | | 2023 |
| 1P Integrated data analysis within IMMUcan identifies prognostic features of early NSCLC D Schulz, M Morfouace, N Eling, M Daniel, S Déglise, BP Fernandez, ... Immuno-Oncology and Technology 20, 2023 | | 2023 |
| Multiplexed tissue image processing and spatial single-cell data integration J Windhager University of Zurich, 2022 | | 2022 |
