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Natacha Couto
Natacha Couto
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Application of next generation sequencing in clinical microbiology and infection prevention
RH Deurenberg, E Bathoorn, MA Chlebowicz, N Couto, M Ferdous, ...
Journal of biotechnology 243, 16-24, 2017
5752017
Diagnosis of bloodstream infections from positive blood cultures and directly from blood samples: recent developments in molecular approaches
N Peker, N Couto, B Sinha, JW Rossen
Clinical Microbiology and Infection 24 (9), 944-955, 2018
2102018
Trends and molecular mechanisms of antimicrobial resistance in clinical staphylococci isolated from companion animals over a 16 year period
N Couto, C Monchique, A Belas, C Marques, LT Gama, C Pomba
Journal of Antimicrobial Chemotherapy 71 (6), 1479-1487, 2016
1272016
Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae
S David, V Cohen, S Reuter, AE Sheppard, T Giani, J Parkhill, ...
Proceedings of the National Academy of Sciences 117 (40), 25043-25054, 2020
1202020
Evaluation of antimicrobial resistance and virulence of enterococci from equipment surfaces, raw materials, and traditional cheeses
R Gaglio, N Couto, C Marques, MFS Lopes, G Moschetti, C Pomba, ...
International Journal of Food Microbiology 236, 107-114, 2016
1102016
Risk factors for faecal colonisation with Escherichia coli producing extended‐spectrum and plasmid‐mediated AmpC β‐lactamases in dogs
A Belas, AS Salazar, LT Gama, N Couto, C Pomba
Veterinary Record 175 (8), 202-202, 2014
802014
One Health drivers of antibacterial resistance: quantifying the relative impacts of human, animal and environmental use and transmission
RD Booton, A Meeyai, N Alhusein, H Buller, E Feil, H Lambert, ...
One Health 12, 100220, 2021
772021
Critical steps in clinical shotgun metagenomics for the concomitant detection and typing of microbial pathogens
N Couto, L Schuele, EC Raangs, MP Machado, CI Mendes, TF Jesus, ...
Scientific reports 8 (1), 13767, 2018
712018
First report of OXA-23-mediated carbapenem resistance in sequence type 2 multidrug-resistant Acinetobacter baumannii associated with urinary tract infection in a cat
C Pomba, A Endimiani, A Rossano, D Saial, N Couto, V Perreten
Antimicrobial agents and chemotherapy 58 (2), 1267-1268, 2014
712014
Small plasmids carrying vga (A) or vga (C) genes mediate resistance to lincosamides, pleuromutilins and streptogramin A antibiotics in methicillin-resistant Staphylococcus …
K Kadlec, CF Pomba, N Couto, S Schwarz
Journal of antimicrobial chemotherapy 65 (12), 2692-2693, 2010
692010
A comparison of three different bioinformatics analyses of the 16S–23S rRNA encoding region for bacterial identification
N Peker, S Garcia-Croes, B Dijkhuizen, HH Wiersma, E van Zanten, ...
Frontiers in microbiology 10, 620, 2019
632019
Prevalence of meticillin-resistant staphylococci among dogs and cats at a veterinary teaching hospital in Portugal
N Couto, C Pomba, A Moodley, L Guardabassi
The Veterinary Record 169 (3), 72, 2011
632011
Characterization of Staphylococcus pseudintermedius isolated from diseased dogs in Lithuania
M Ruzauskas, N Couto, A Pavilonis, I Klimiene, R Siugzdiniene, ...
Polish Journal of Veterinary Sciences, 2016
602016
Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure
FX López-Labrador, JR Brown, N Fischer, H Harvala, S Van Boheemen, ...
Journal of Clinical Virology 134, 104691, 2021
592021
Genetic relatedness, antimicrobial and biocide susceptibility comparative analysis of methicillin-resistant and-susceptible Staphylococcus pseudintermedius from Portugal
N Couto, A Belas, I Couto, V Perreten, C Pomba
Microbial Drug Resistance 20 (4), 364-371, 2014
572014
Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting
JJC de Vries, JR Brown, N Couto, M Beer, P Le Mercier, I Sidorov, A Papa, ...
Journal of Clinical Virology 138, 104812, 2021
522021
Clonal diversity, virulence patterns and antimicrobial and biocide susceptibility among human, animal and environmental MRSA in Portugal
N Couto, A Belas, K Kadlec, S Schwarz, C Pomba
Journal of Antimicrobial Chemotherapy 70 (9), 2483-2487, 2015
512015
A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings
HA Thorpe, R Booton, T Kallonen, MJ Gibbon, N Couto, V Passet, ...
Nature Microbiology 7 (12), 2054-2067, 2022
492022
Prevalence, species distribution and antimicrobial resistance patterns of methicillin-resistant staphylococci in Lithuanian pet animals
M Ruzauskas, N Couto, S Kerziene, R Siugzdiniene, I Klimiene, ...
Acta Veterinaria Scandinavica 57, 1-7, 2015
472015
Treatment of a lower urinary tract infection in a cat caused by a multi-drug methicillin-resistant Staphylococcus pseudintermedius and Enterococcus faecalis
C Pomba, N Couto, A Moodley
Journal of feline medicine and surgery 12 (10), 802-806, 2010
432010
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